System Down. Our servers are currently NOT processing any submissions, and we don't have an estimate for recovery at present.

We strongly recommend using instead the UIBK Sever of MiGA Online as a complete, up-to-date replacement of this server.

Alternatively, you can also use MiGA @ XSEDE.



Getting Started with MiGA

Welcome to the Microbial Genomes Atlas Online



TypeMat

Query the collection of type material genomes to identify the closest genomes available from formally named species and determine taxonomic classification and novelty rank

NCBI Prok

Query the complete- and chromosome-level NCBI Genome database (Prokaryotes) with your own genomes to identify the most closely related complete genomes available

Preproc

Submit your data to this project if you want to preprocess your genomic or metagenomic dataset without additional fine-resolution taxonomic analyses

Upload genome or metagenome

Clades

If you want high resolution within well characterized species, query select clade-specific databases for typing using Average Nucleotide Identity (ANI)

List clade projects

Environments

We're currently expanding MiGA to include collections of genomes for environmental genomics. If you would like to see an additional set included, please contact us

WB Bins HQ

Population genomes (MAGs) recovered from the lakes and estuaries along the Chattahoochee River (Southeast USA) by Rodriguez-R et al 2020

GROS

Genome Repository of Oiled Systems: Curated collection of MAGs, SAGs, and isolates from crude-oil impacted environments by Karthikeyan et al 2020

TARA MAGs (Delmont)

Metagenome-assembled genomes (MAGs) recovered from the TARA Oceans metagenomic samples by Delmont et al 2018

TARA MAGs (Tully)

Metagenome-assembled genomes (MAGs) recovered from the TARA Oceans metagenomic samples by Tully et al 2018

RefSoil genomes

Manually-curated list of complete genomes from NCBI RefSeq associated with soil environments by Choi et al 2017

Bio-Gas Microbiome

MAGs from 134 samples collected from biogas plants and lab-scale reactors in seven countries by Campanaro et al 2020

MAGs

Metagenome-assembled genomes (MAGs) recovered from different binning projects